About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_759089_767332_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
759089 - 767332
Intron Length:
8244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
RNEKLKKEMLGKLKDLGNLV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.7
82.5
27.6
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
TTC1
Ensembl Gene ID:
ENSAPLG00000008791
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009153
732665 - 767466
34802