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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7673105_7673544_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7673105 - 7673544
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GGCTTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
GPGNPKQGGPESKKQTQVSF
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
76.5
0.6
1
72.5
42.4
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
PCDHAC1
Ensembl Gene ID:
ENSAPLG00000029593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020422
7673034 - 7751562
78529