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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7673647_7707879_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7673647 - 7707879
Intron Length:
34233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTTCTTGACT
Flanking Amino Acid:
QWPTVSSATPEPEAGEVSPP
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
81.8
31.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.3
0.75
0.9
80.9
36.6
Minor 5ss
36.7
-1.5
3.3
49.9
46.4
Minor BPS
82.1
1.09
1
91.69
30.7

Associated Gene:

Gene:
PCDHAC1
Ensembl Gene ID:
ENSAPLG00000029593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020422
7673034 - 7751562
78529