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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7707969_7710044_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7707969 - 7710044
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATACTTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATAATCTAACC
Flanking Amino Acid:
YSASLRAGMQSAVHMEEAGI
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
76.8
0.6
1
74.2
40.1
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
50.2
-0
1.9
66.47
38.3

Associated Gene:

Gene:
PCDHAC1
Ensembl Gene ID:
ENSAPLG00000029593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020422
7673034 - 7751562
78529