About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7710104_7748563_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7710104 - 7748563
Intron Length:
38460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
CACACACTAACA
Flanking Amino Acid:
QSDRLSAVFMPKHPNPDWRY
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
85.5
0.8
0.8
79.9
32.2
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
46.2
-0.2
2
55.46
42.8

Associated Gene:

Gene:
PCDHAC1
Ensembl Gene ID:
ENSAPLG00000029593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020422
7673034 - 7751562
78529