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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7719134_7719244_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7719134 - 7719244
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCTACAG
5'SS Class:
weak_major
3'SS Sequence:
ACATTGATGCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
ACAACATTGATG
Flanking Amino Acid:
LFTIIGLTVIKLPQGLKVQP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.2
0.1
1.1
45.3
38.4
Major BPS
76.2
0.65
1
67
39.8
Major PPT
45.1
-0.2
1.7
43.6
45.8
Minor 5ss
26.6
-2.7
3.1
29.9
36.8
Minor BPS
47
-0.3
1.7
47.32
39.7

Associated Gene:

Gene:
PCDHAC2
Ensembl Gene ID:
ENSAPLG00000003839
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003957
7718866 - 7721446
2581