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Intron Name: Anas_platyrhynchos_platyrhynchos_14_7720708_7720747_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7720708 - 7720747

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGGATGGT

5'SS Class:

weak_major

3'SS Sequence:

TGGTACAGCCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTGGAT

U12 Branch Point Sequence:

CCCCCCCCAAGT

Flanking Amino Acid:

SALQQLVLTAISVRVVDTND

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.9

0.02

1.1

49.8

41.1

Major BPS

56.3

0.16

1.5

57.1

49.4

Major PPT

57.4

0.17

1.1

47.6

44.5

Minor 5ss

29.8

-2.3

3.6

48.3

47.9

Minor BPS

41.7

-0.5

2.1

53.97

47.1

Associated Gene:

Gene:

PCDHAC2

Ensembl Gene ID:

ENSAPLG00000003839

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003957

7718866 - 7721446

2581