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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7791782_7797324_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7791782 - 7797324
Intron Length:
5543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCCTCTTTAATT
Flanking Amino Acid:
RCDVARQLGKNNEFSKLVAE
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.7
0.76
0.8
77.6
34.4
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
70.5
0.72
1.3
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041417
7791624 - 7806927
15304