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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7798081_7801947_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7798081 - 7801947
Intron Length:
3867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACTT
5'SS Class:
major
3'SS Sequence:
TGTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATCTGTCTGACT
Flanking Amino Acid:
QCNPEESTSEDGIHTLTCAL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.6
44.8
Major BPS
80
0.75
1
78.6
31
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
42.4
-0.8
3.4
65.7
45.3
Minor BPS
47.8
-0
2.1
69.66
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023692
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041417
7791624 - 7806927
15304