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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7838201_7839914_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7838201 - 7839914
Intron Length:
1714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGACCT
5'SS Class:
major
3'SS Sequence:
TTGTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTTTACA
Flanking Amino Acid:
LDPEEIQMADYISKNVSATE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.1
38.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
37
-1.5
3.3
54.6
42.2
Minor BPS
58.1
0.25
1.8
71.98
40

Associated Gene:

Gene:
NRG2
Ensembl Gene ID:
ENSAPLG00000015077
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015724
7833606 - 7900570
66965