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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7840039_7840984_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7840039 - 7840984
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TCCTTTTTAAAG
Flanking Amino Acid:
IVCVVAYCKTKKQRKQMHNH
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
79.7
0.67
1
81.4
27.9
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
59.5
0.16
1.5
59.29
43.1

Associated Gene:

Gene:
NRG2
Ensembl Gene ID:
ENSAPLG00000015077
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015724
7833606 - 7900570
66965