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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7896825_7900542_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7896825 - 7900542
Intron Length:
3718

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCTTGGACC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GGTTTCACATTG
Flanking Amino Acid:
AAGGKVGKLAVPPKLKKLK
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.4
61.8
41.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
87.5
0.84
0.6
84.2
23.8
Minor 5ss
25.2
-2.8
3.7
28.2
35.9
Minor BPS
41.3
-0.8
1.9
45.88
40.7

Associated Gene:

Gene:
NRG2
Ensembl Gene ID:
ENSAPLG00000015077
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015724
7833606 - 7900570
66965