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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8086124_8087130_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8086124 - 8087130
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
AACAAACCAACT
Flanking Amino Acid:
FLPNLLVWGKRTDSASKMNY
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
86.2
0.82
0.7
81.2
30.8
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
37.8
-0.8
2
52.45
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019867
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015844
8086080 - 8103762
17683