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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8104988_8121066_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8104988 - 8121066
Intron Length:
16079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TGGACATTAACT
Flanking Amino Acid:
IAEEKIKELEQKKSYLERSV
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
65.3
0.56
1.7
79.24
42.1

Associated Gene:

Gene:
PFDN1
Ensembl Gene ID:
ENSAPLG00000015211
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015854
8104904 - 8135487
30584