Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8121152_8135141_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8121152 - 8135141

Intron Length:

13990

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

TTTCCACTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TGTTTTTCCACT

Flanking Amino Acid:

ETRMYEGVGRMFILQSKGVI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

74.3

36.2

Major BPS

61.3

0.28

30.6

Major PPT

0.76

0.8

77.9

29.6

Minor 5ss

33.1

-1.9

2.8

41.4

38.2

Minor BPS

52.2

0.15

76.21

40.7

Associated Gene:

Gene:

PFDN1

Ensembl Gene ID:

ENSAPLG00000015211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015854

8104904 - 8135487

30584