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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8142572_8144613_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8142572 - 8144613
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCATCCTTAAAA
Flanking Amino Acid:
YIRELGAPSCICQPGYHGER
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
80.4
27.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77
0.61
0.8
69.8
35.6
Minor 5ss
41.7
-0.9
3
57.1
40.8
Minor BPS
68.9
0.59
1.4
69.43
42.6

Associated Gene:

Gene:
HBEGF
Ensembl Gene ID:
ENSAPLG00000015272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015913
8142207 - 8148005
5799