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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8144792_8147275_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8144792 - 8147275
Intron Length:
2484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAAAT
Flanking Amino Acid:
SGDELSEVPRVAFLSKPQGL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.4
0.66
0.9
70
45
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
61.5
0.44
1.5
77.37
39.2

Associated Gene:

Gene:
HBEGF
Ensembl Gene ID:
ENSAPLG00000015272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015913
8142207 - 8148005
5799