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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8167919_8168280_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8167919 - 8168280
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCTCACTT
Flanking Amino Acid:
HEEEESDTEESELMHRQGPE
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
82.5
0.73
0.7
73.7
31.3
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
46.3
-0.2
1.8
60.48
43.9

Associated Gene:

Gene:
SLC4A9
Ensembl Gene ID:
ENSAPLG00000015338
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016029
8154359 - 8168331
13973