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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8184055_8211385_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8184055 - 8211385
Intron Length:
27331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTAC
5'SS Class:
major
3'SS Sequence:
ACGTACACTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCATACTAACC
Flanking Amino Acid:
ARLEALLEAAGIGKLSTADG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
71.4
35
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
53
0.07
1.1
50.6
37.4
Minor 5ss
39.5
-1.2
3
52.7
44.5
Minor BPS
48.5
-0.1
1.9
64.76
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216