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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8215417_8216389_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8215417 - 8216389
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
AAAGACTTACAT
Flanking Amino Acid:
CADVNAQSSTGNTALTYACA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
89.2
0.88
0.6
84.8
22.9
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
45
-0.3
1.9
59.03
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216