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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8216624_8217912_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8216624 - 8217912
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
ESALTLACYKGHLDMVRFLL
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.8
0.62
1
79.1
32.8
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216