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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8218008_8220998_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8218008 - 8220998
Intron Length:
2991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTTCCTGATTT
Flanking Amino Acid:
MHTALMEACMDGHVEVARLL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.3
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.7
0.69
0.8
76.2
32.4
Minor 5ss
35.6
-1.6
2.8
42.6
39.3
Minor BPS
59.4
0.37
1.7
76.4
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216