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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8223149_8235310_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8223149 - 8235310
Intron Length:
12162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCTCTTACAA
Flanking Amino Acid:
DVLLQAGADLEHESEGGRTP
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
74.7
0.55
0.9
70.5
33.6
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
53.6
0.11
1.7
65.41
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216