About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8236537_8236733_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8236537 - 8236733
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCATCAGT
5'SS Class:
weak_major
3'SS Sequence:
AATGACCACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CCAACGTTAATA
Flanking Amino Acid:
KILMMTILYTMVSLACAGGH
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.4
59.2
45.4
Major BPS
80
0.75
1
78.6
31
Major PPT
56.7
0.15
1
47.7
39.6
Minor 5ss
38.3
-1.3
2.9
50
40.3
Minor BPS
48.5
-0.1
2.1
56.34
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002418
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002480
8179069 - 8257284
78216