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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8264757_8267030_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8264757 - 8267030
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTTCTAATC
Flanking Amino Acid:
TSASASKTPTRLDGEGNSNS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.8
0.76
0.8
76.4
37.6
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
61
0.33
1.6
71.55
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035502
8264662 - 8281858
17197