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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8267178_8270340_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8267178 - 8270340
Intron Length:
3163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCACAAATT
Flanking Amino Acid:
REEGWKEVVRRSKKLSVPAS
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.7
0.44
1
64.5
41.5
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
48.8
-0
2.2
76.43
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035502
8264662 - 8281858
17197