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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8281340_8281798_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8281340 - 8281798
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
TTTCTTGCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAATA
Flanking Amino Acid:
NSTECTDAQQIWPGTWAPHI
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.8
77.5
31.2
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
66.9
0.53
1.6
76.77
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035502
8264662 - 8281858
17197