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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8287402_8287585_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8287402 - 8287585
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
AGCCTCTCACCC
Flanking Amino Acid:
AGMAELYVKPGNKERGWNDP
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
76.4
0.59
0.8
70.2
30.7
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
45
-0.3
1.8
50.84
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002721
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043251
8285878 - 8288708
2831