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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8287747_8288002_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8287747 - 8288002
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGAAG
5'SS Class:
major
3'SS Sequence:
CTCGTCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCCAT
U12 Branch Point Sequence:
TCCTCGTCCATC
Flanking Amino Acid:
AAAGEAPSGERRCRPQ*
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
60.7
45.5
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
71.2
0.48
0.9
62.1
39
Minor 5ss
36.1
-1.6
3.3
47.9
47.8
Minor BPS
41.8
-0.6
2.5
53.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002721
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002757
8287726 - 8293469
5744