Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8288534_8288743_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8288534 - 8288743

Intron Length:

210

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGACCA

5'SS Class:

major

3'SS Sequence:

CCTGTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCGAT

U12 Branch Point Sequence:

GATGGCTCAGCC

Flanking Amino Acid:

DTAMRVHPAQEEERPHIWEC

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

61.3

39.3

Major BPS

46.4

-0.2

1.5

43.9

48.6

Major PPT

76.5

0.6

0.8

69.5

31.2

Minor 5ss

25.4

-2.8

3.1

30.7

42.7

Minor BPS

42.6

-0.5

2.1

52.71

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002721

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002757

8287726 - 8293469

5744