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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8289440_8289686_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8289440 - 8289686
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
ACCCTGTGCACT
Flanking Amino Acid:
AKALHKMCSKIVAERAVASS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.1
37.5
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
41.8
-0.9
3.2
54.8
49.4
Minor BPS
37.9
-0.8
2.3
51.57
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002721
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002757
8287726 - 8293469
5744