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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8307475_8309858_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8307475 - 8309858
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
TTTCCTCTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TCCCCCCTAACC
Flanking Amino Acid:
PGATAGQRCGQISLFFSVES
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.3
59.4
42.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
72.8
0.51
1
71.6
33.2
Minor 5ss
35.2
-1.7
3.2
42.8
44.5
Minor BPS
60.5
0.31
1.8
68.84
42.6

Associated Gene:

Gene:
SH3TC2
Ensembl Gene ID:
ENSAPLG00000002842
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002897
8307351 - 8321640
14290