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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8309987_8310476_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8309987 - 8310476
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
GTTCTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CTCTCCTTCAGC
Flanking Amino Acid:
DDRAVRALFKELSARLVCVQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
75.4
0.57
0.9
69.6
36.7
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
53.8
0.1
2.1
65.58
46.5

Associated Gene:

Gene:
SH3TC2
Ensembl Gene ID:
ENSAPLG00000002842
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002897
8307351 - 8321640
14290