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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8311959_8312317_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8311959 - 8312317
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
TCACACCAAAAT
Flanking Amino Acid:
EIGGVTSQPIVKGRCTATED
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
83.7
0.76
0.8
76.2
37.8
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
40.9
-0.6
2.1
57.69
44.1

Associated Gene:

Gene:
SH3TC2
Ensembl Gene ID:
ENSAPLG00000002842
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002897
8307351 - 8321640
14290