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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8317448_8318925_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8317448 - 8318925
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTCTTTCCAAGT
Flanking Amino Acid:
EDELVEMYFQAAIQTALKSE
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
77.8
0.63
0.7
70.1
30.9
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
42.8
-0.4
2
59.49
44.5

Associated Gene:

Gene:
SH3TC2
Ensembl Gene ID:
ENSAPLG00000002842
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002897
8307351 - 8321640
14290