About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8388266_8391508_R

Intron Information:

Intron Rank:
141688
Intron Class:
major
Intron Phase:
Intron Coordinates:
8388266 - 8391508
Intron Length:
3243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
63
0.4
1.6
73.45
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023583
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020361
8387079 - 8392143
5065