Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8397246_8400719_F

Intron Information:

Intron Rank:

151148

Intron Class:

major

Intron Phase:

Intron Coordinates:

8397246 - 8400719

Intron Length:

3474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

GCTTGCTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTGCAA

U12 Branch Point Sequence:

CCTGCTCCCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

47.8

-0.1

1.3

57.3

39.4

Major PPT

78.8

0.65

0.9

41.9

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

39.9

-0.7

2.2

55.84

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031202

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046528

8396711 - 8400882

4172