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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8406950_8416860_F

Intron Information:

Intron Rank:
127315
Intron Class:
major
Intron Phase:
Intron Coordinates:
8406950 - 8416860
Intron Length:
9911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTCCCCGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77.4
0.62
0.9
73.6
31.6
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
61.7
0.36
1.9
80.14
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018648
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023214
8405924 - 8417017
11094