Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_84236_84381_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

84236 - 84381

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTACGTTGG

5'SS Class:

major

3'SS Sequence:

GTTTCTGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAT

U12 Branch Point Sequence:

GTTTCTGCCACA

Flanking Amino Acid:

WSLRGASQQNLFLQTLLHHC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.1

0.31

1.2

54.1

45.4

Major BPS

67.4

0.43

1.2

38.9

Major PPT

74.9

0.56

0.9

68.7

37.3

Minor 5ss

41.4

-1

3.1

58.4

46.1

Minor BPS

44.2

-0.4

2.5

63.91

42.7

Associated Gene:

Gene:

AFAP1L1

Ensembl Gene ID:

ENSAPLG00000011997

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033199

83218 - 91111

7894

ENSAPLT00000012526

83218 - 91338

8121