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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8495066_8495419_R

Intron Information:

Intron Rank:
151464
Intron Class:
major
Intron Phase:
Intron Coordinates:
8495066 - 8495419
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
84.3
29.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.9
0.58
0.9
70.7
39.8
Minor 5ss
42.7
-0.8
3
58.2
46.4
Minor BPS
62.5
0.39
2
75.34
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029048
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031659
8494023 - 8496972
2950