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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8568155_8579461_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8568155 - 8579461
Intron Length:
11307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GCCTCTGTACTC
Flanking Amino Acid:
GDGAFGKVYKAKNKETGALA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
43.3
-0.5
2.1
49.58
42.1

Associated Gene:

Gene:
STK10
Ensembl Gene ID:
ENSAPLG00000003252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003359
8567999 - 8612332
44334