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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8579627_8593949_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8579627 - 8593949
Intron Length:
14323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTGATTGTAATT
Flanking Amino Acid:
GAFYWDGKLWIMIEFCPGGA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.5
35.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
30.3
-2.3
3.3
33.4
42
Minor BPS
46.9
-0.1
2
62.98
42.5

Associated Gene:

Gene:
STK10
Ensembl Gene ID:
ENSAPLG00000003252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003359
8567999 - 8612332
44334