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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8610783_8611142_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8610783 - 8611142
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CCTGCTCTGATG
Flanking Amino Acid:
RHELLRKHEKEREQMQRYNQ
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
79
0.72
1
69
38.9
Major PPT
73
0.52
1
65.5
41
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
44.7
-0.5
1.8
45.92
41.9

Associated Gene:

Gene:
STK10
Ensembl Gene ID:
ENSAPLG00000003252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018224
8606110 - 8612332
6223
ENSAPLT00000003359
8567999 - 8612332
44334
ENSAPLT00000029913
8593507 - 8612332
18826