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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8621564_8633984_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8621564 - 8633984
Intron Length:
12421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTGTTCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCACTCATATCT
Flanking Amino Acid:
QKRRIPNKHYVYIIKVTWSN
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.7
0.67
0.8
73.1
32
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
48.1
-0
1.9
66.92
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003738
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003849
8621046 - 8690486
69441