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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8634066_8653310_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8634066 - 8653310
Intron Length:
19245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGACTTTAATC
Flanking Amino Acid:
RRYSKFFDLQMQMLDKFPME
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.3
0.84
0.6
81
31
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
72
0.67
1.2
74.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003738
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003849
8621046 - 8690486
69441