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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8690083_8690201_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8690083 - 8690201
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTATTGGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTTATT
Flanking Amino Acid:
RPPPRRDLTIPRGLNLPKPP
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.9
0.52
1
68.2
42.2
Minor 5ss
34.8
-1.7
3.2
43.2
39
Minor BPS
62.3
0.47
1.6
78.5
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003738
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003849
8621046 - 8690486
69441