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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8701305_8701848_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8701305 - 8701848
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCTGACTGACC
Flanking Amino Acid:
RSSSASESSLVTAPSSPLSP
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70
42.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
77
0.61
0.7
71.5
26.4
Minor 5ss
32.1
-2
3.1
40.4
45.5
Minor BPS
42.8
-0.5
2.2
56.6
41.9

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020195
8701060 - 8782112
81053
ENSAPLT00000026633
8701060 - 8815197
114138
ENSAPLT00000015593
8701060 - 8729672
28613
ENSAPLT00000021757
8701060 - 8743505
42446
ENSAPLT00000021509
8701060 - 8815197
114138
ENSAPLT00000040631
8701060 - 8769804
68745
ENSAPLT00000021260
8701060 - 8781736
80677
ENSAPLT00000028184
8701060 - 8782112
81053