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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8701975_8702791_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8701975 - 8702791
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TCGGGCTGAGCT
Flanking Amino Acid:
HGVINQLKILGTVQSSPVTV
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
75.9
0.58
0.9
68.6
37.3
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
43.7
-0.4
2.1
60.2
49

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021509
8701060 - 8815197
114138
ENSAPLT00000040631
8701060 - 8769804
68745
ENSAPLT00000021260
8701060 - 8781736
80677
ENSAPLT00000028184
8701060 - 8782112
81053
ENSAPLT00000020195
8701060 - 8782112
81053
ENSAPLT00000026633
8701060 - 8815197
114138
ENSAPLT00000015593
8701060 - 8729672
28613
ENSAPLT00000021757
8701060 - 8743505
42446