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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8703500_8706199_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8703500 - 8706199
Intron Length:
2700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGTCTCTAACG
Flanking Amino Acid:
YGITHEVQILDSMFAETMTS
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79
0.65
0.8
73
31.8
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
58.4
0.13
1.8
63.53
44.6

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021260
8701060 - 8781736
80677
ENSAPLT00000028184
8701060 - 8782112
81053
ENSAPLT00000020195
8701060 - 8782112
81053
ENSAPLT00000026633
8701060 - 8815197
114138
ENSAPLT00000015593
8701060 - 8729672
28613
ENSAPLT00000021757
8701060 - 8743505
42446
ENSAPLT00000021509
8701060 - 8815197
114138
ENSAPLT00000040631
8701060 - 8769804
68745