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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8706761_8769321_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8706761 - 8769321
Intron Length:
62561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGG
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
GAGCCCTCATGC
Flanking Amino Acid:
VLALVPLRCADTSHQTRSVS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.4
48.8
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
81.6
0.71
0.7
77.1
24.9
Minor 5ss
29.1
-2.4
3.4
38.7
46.4
Minor BPS
41.9
-0.6
2
46.31
42

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026633
8701060 - 8815197
114138
ENSAPLT00000021260
8701060 - 8781736
80677
ENSAPLT00000020195
8701060 - 8782112
81053
ENSAPLT00000040631
8701060 - 8769804
68745
ENSAPLT00000028184
8701060 - 8782112
81053